Hosted by: Vital-IT

The Centrifuge Tool

DBMV

This tool allows the rapid retrieval of information on predicted Arabidopsis thaliana proteins as well as their orthologs and paralogs, using as input Arabidopsis Genome Information (AGI) numbers (i.e. At3g45140) or Affymetrix numbers (i.e. 12046_at) or CATMA number (i.e. CATMA1a46055).

Armand, F., Bucher, P., Jongeneel, C.V., and Farmer, E.E., (2005) Rapid and Selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge. Bioinformatics 21, 2906-2908.

Cut and paste AGI, Affymetrix or CATMA code(s)
Your file of AGI, Affymetrix or CATMA codes

For contig analysis, define
first AGI code
last AGI code
Search with words

Blast Options
Organisms	Outputs number	Alignments	Seg filter
A. thaliana		yes	yes
O. sativa (rice)		no	no
C. elegans
D. melanogaster
H. sapiens
all

Information Choice

Function	Gene Ontology	IP and MW
Note (Transcription verified by whole genome array (Yamada et al.))
Catma IDs	Affymetrix IDs
Cellular Location	Transmembrane Domains	Blast Result
Swissprot Feature	Interpro Domains

Results Format

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